The Summer School provides hands-on training in computational analysis of proteomics data generated by modern mass spectrometers. The practical parts will enable participants to perform sophisticated quantitative data analysis in their own future research using the publicly available MaxQuant and Perseus software.
Alexander Makarov
Thermo Fisher Scientific
Albert Heck
Utrecht University
Kelly Stecker
Utrecht University
Noortje de Haan
Leiden University Medical Centre
Ron Heeren
Maastricht University
Time/Day | Sunday, July 20 | Monday, July 21 | Tuesday, July 22 | Wednesday, July 23 | Thursday, July 24 | Friday, July 25 |
---|---|---|---|---|---|---|
00:00 |
|
Alexander Makarov
Keynote speaker |
Albert J. R. Heck
Keynote speaker |
T07: Perseus basics II |
Noortje de Haan
Keynote speaker |
Ron Heeren
Keynote speaker |
00:45 |
|
T01: MaxQuant DDA basics | L09: Metaproteomics | T08: Perseus intermediate | T10: Single cell proteomics | T14: Perseus time-series |
01:30 |
|
Coffee break | Coffee break | Coffee break | Coffee break | Coffee break |
02:00 |
|
T02: MaxQuant DDA intermediate | L10: Isobaric labeling | L12: Ion mobility CCS | L16: MaxQuant Atlas | T15: Interactions |
02:45 |
|
L05: Output tables | T04: Isobaric labeling | Q&A | T11: MaxQuant Atlas | Q&A |
03:30 |
|
Q&A | Q&A | Q&A | ||
18:45 | Opening | Announcements | Announcements | Announcements | Announcements |
|
19:00 | L01: Mass spectrometry-based proteomics | L06: DIA identification | T05: Dependent-peptide search | L13: PTMs theory | T12: Protein isoforms |
|
19:45 | L02: Andromeda search engine | L07: DIA quantification & multiplexing |
Kelly E. Stecker
Keynote speaker |
L14: PTMs | Participants presentations |
|
20:30 | Coffee break | Coffee break | Coffee break | Coffee break | Coffee break |
|
21:00 | L03: MaxQuant DDA workflow | L08: Machine learning and spectrum prediction | L11: Perseus introduction | T09: PTMs | L17: Cross linking |
|
21:45 | L04: Label-free quantification | T03: DIA | T06: Perseus basics I | L15: DIA PTMs | T13 Cross linking |
|
22:30 | Lunch break | Lunch break | Lunch break | Lunch break | Lunch break |
|
Time/Day | Sunday, July 20 | Monday, July 21 | Tuesday, July 22 | Wednesday, July 23 | Thursday, July 24 | Friday, July 25 |
---|---|---|---|---|---|---|
01:00 |
|
Alexander Makarov
Keynote speaker |
Albert J. R. Heck
Keynote speaker |
T07: Perseus basics II |
Noortje de Haan
Keynote speaker |
Ron Heeren
Keynote speaker |
01:45 |
|
T01: MaxQuant DDA basics | L09: Metaproteomics | T08: Perseus intermediate | T10: Single cell proteomics | T14: Perseus time-series |
02:30 |
|
Coffee break | Coffee break | Coffee break | Coffee break | Coffee break |
03:00 |
|
T02: MaxQuant DDA intermediate | L10: Isobaric labeling | L12: Ion mobility CCS | L16: MaxQuant Atlas | T15: Interactions |
03:45 |
|
L05: Output tables | T04: Isobaric labeling | Q&A | T11: MaxQuant Atlas | Q&A |
04:30 |
|
Q&A | Q&A | Q&A | ||
19:45 | Opening | Announcements | Announcements | Announcements | Announcements |
|
20:00 | L01: Mass spectrometry-based proteomics | L06: DIA identification | T05: Dependent-peptide search | L13: PTMs theory | T12: Protein isoforms |
|
20:45 | L02: Andromeda search engine | L07: DIA quantification & multiplexing |
Kelly E. Stecker
Keynote speaker |
L14: PTMs | Participants presentations |
|
21:30 | Coffee break | Coffee break | Coffee break | Coffee break | Coffee break |
|
22:00 | L03: MaxQuant DDA workflow | L08: Machine learning and spectrum prediction | L11: Perseus introduction | T09: PTMs | L17: Cross linking |
|
22:45 | L04: Label-free quantification | T03: DIA | T06: Perseus basics I | L15: DIA PTMs | T13 Cross linking |
|
23:30 | Lunch break | Lunch break | Lunch break | Lunch break | Lunch break |
|
Time/Day | Sunday, July 20 | Monday, July 21 | Tuesday, July 22 | Wednesday, July 23 | Thursday, July 24 | Friday, July 25 |
---|---|---|---|---|---|---|
00:30 |
|
Lunch break | Lunch break | Lunch break | Lunch break | Lunch break |
02:00 |
|
Alexander Makarov
Keynote speaker |
Albert J. R. Heck
Keynote speaker |
T07: Perseus basics II |
Noortje de Haan
Keynote speaker |
Ron Heeren
Keynote speaker |
02:45 |
|
T01: MaxQuant DDA basics | L09: Metaproteomics | T08: Perseus intermediate | T10: Single cell proteomics | T14: Perseus time-series |
03:30 |
|
Coffee break | Coffee break | Coffee break | Coffee break | Coffee break |
04:00 |
|
T02: MaxQuant DDA intermediate | L10: Isobaric labeling | L12: Ion mobility CCS | L16: MaxQuant Atlas | T15: Interactions |
04:45 |
|
L05: Output tables | T04: Isobaric labeling | Q&A | T11: MaxQuant Atlas | Q&A |
05:30 |
|
Q&A | Q&A | Q&A | ||
20:45 | Opening | Announcements | Announcements | Announcements | Announcements |
|
21:00 | L01: Mass spectrometry-based proteomics | L06: DIA identification | T05: Dependent-peptide search | L13: PTMs theory | T12: Protein isoforms |
|
21:45 | L02: Andromeda search engine | L07: DIA quantification & multiplexing |
Kelly E. Stecker
Keynote speaker |
L14: PTMs | Participants presentations |
|
22:30 | Coffee break | Coffee break | Coffee break | Coffee break | Coffee break |
|
23:00 | L03: MaxQuant DDA workflow | L08: Machine learning and spectrum prediction | L11: Perseus introduction | T09: PTMs | L17: Cross linking |
|
23:45 | L04: Label-free quantification | T03: DIA | T06: Perseus basics I | L15: DIA PTMs | T13 Cross linking |
|
Time/Day | Sunday, July 20 | Monday, July 21 | Tuesday, July 22 | Wednesday, July 23 | Thursday, July 24 | Friday, July 25 |
---|---|---|---|---|---|---|
00:00 |
|
L03: MaxQuant DDA workflow | L08: Machine learning and spectrum prediction | L11: Perseus introduction | T09: PTMs | L17: Cross linking |
00:45 |
|
L04: Label-free quantification | T03: DIA | T06: Perseus basics I | L15: DIA PTMs | T13 Cross linking |
01:30 |
|
Lunch break | Lunch break | Lunch break | Lunch break | Lunch break |
03:00 |
|
Alexander Makarov
Keynote speaker |
Albert J. R. Heck
Keynote speaker |
T07: Perseus basics II |
Noortje de Haan
Keynote speaker |
Ron Heeren
Keynote speaker |
03:45 |
|
T01: MaxQuant DDA basics | L09: Metaproteomics | T08: Perseus intermediate | T10: Single cell proteomics | T14: Perseus time-series |
04:30 |
|
Coffee break | Coffee break | Coffee break | Coffee break | Coffee break |
05:00 |
|
T02: MaxQuant DDA intermediate | L10: Isobaric labeling | L12: Ion mobility CCS | L16: MaxQuant Atlas | T15: Interactions |
05:45 |
|
L05: Output tables | T04: Isobaric labeling | Q&A | T11: MaxQuant Atlas | Q&A |
06:30 |
|
Q&A | Q&A | Q&A | ||
21:45 | Opening | Announcements | Announcements | Announcements | Announcements |
|
22:00 | L01: Mass spectrometry-based proteomics | L06: DIA identification | T05: Dependent-peptide search | L13: PTMs theory | T12: Protein isoforms |
|
22:45 | L02: Andromeda search engine | L07: DIA quantification & multiplexing |
Kelly E. Stecker
Keynote speaker |
L14: PTMs | Participants presentations |
|
23:30 | Coffee break | Coffee break | Coffee break | Coffee break | Coffee break |
|
Time/Day | Sunday, July 20 | Monday, July 21 | Tuesday, July 22 | Wednesday, July 23 | Thursday, July 24 | Friday, July 25 |
---|---|---|---|---|---|---|
00:30 |
|
Coffee break | Coffee break | Coffee break | Coffee break | Coffee break |
01:00 |
|
L03: MaxQuant DDA workflow | L08: Machine learning and spectrum prediction | L11: Perseus introduction | T09: PTMs | L17: Cross linking |
01:45 |
|
L04: Label-free quantification | T03: DIA | T06: Perseus basics I | L15: DIA PTMs | T13 Cross linking |
02:30 |
|
Lunch break | Lunch break | Lunch break | Lunch break | Lunch break |
04:00 |
|
Alexander Makarov
Keynote speaker |
Albert J. R. Heck
Keynote speaker |
T07: Perseus basics II |
Noortje de Haan
Keynote speaker |
Ron Heeren
Keynote speaker |
04:45 |
|
T01: MaxQuant DDA basics | L09: Metaproteomics | T08: Perseus intermediate | T10: Single cell proteomics | T14: Perseus time-series |
05:30 |
|
Coffee break | Coffee break | Coffee break | Coffee break | Coffee break |
06:00 |
|
T02: MaxQuant DDA intermediate | L10: Isobaric labeling | L12: Ion mobility CCS | L16: MaxQuant Atlas | T15: Interactions |
06:45 |
|
L05: Output tables | T04: Isobaric labeling | Q&A | T11: MaxQuant Atlas | Q&A |
07:30 |
|
Q&A | Q&A | Q&A | ||
22:45 | Opening | Announcements | Announcements | Announcements | Announcements |
|
23:00 | L01: Mass spectrometry-based proteomics | L06: DIA identification | T05: Dependent-peptide search | L13: PTMs theory | T12: Protein isoforms |
|
23:45 | L02: Andromeda search engine | L07: DIA quantification & multiplexing |
Kelly E. Stecker
Keynote speaker |
L14: PTMs | Participants presentations |
|
Time/Day | Sunday, July 20 | Monday, July 21 | Tuesday, July 22 | Wednesday, July 23 | Thursday, July 24 | Friday, July 25 |
---|---|---|---|---|---|---|
00:00 |
|
L01: Mass spectrometry-based proteomics | L06: DIA identification | T05: Dependent-peptide search | L13: PTMs theory | T12: Protein isoforms |
00:45 |
|
L02: Andromeda search engine | L07: DIA quantification & multiplexing |
Kelly E. Stecker
Keynote speaker |
L14: PTMs | Participants presentations |
01:30 |
|
Coffee break | Coffee break | Coffee break | Coffee break | Coffee break |
02:00 |
|
L03: MaxQuant DDA workflow | L08: Machine learning and spectrum prediction | L11: Perseus introduction | T09: PTMs | L17: Cross linking |
02:45 |
|
L04: Label-free quantification | T03: DIA | T06: Perseus basics I | L15: DIA PTMs | T13 Cross linking |
03:30 |
|
Lunch break | Lunch break | Lunch break | Lunch break | Lunch break |
05:00 |
|
Alexander Makarov
Keynote speaker |
Albert J. R. Heck
Keynote speaker |
T07: Perseus basics II |
Noortje de Haan
Keynote speaker |
Ron Heeren
Keynote speaker |
05:45 |
|
T01: MaxQuant DDA basics | L09: Metaproteomics | T08: Perseus intermediate | T10: Single cell proteomics | T14: Perseus time-series |
06:30 |
|
Coffee break | Coffee break | Coffee break | Coffee break | Coffee break |
07:00 |
|
T02: MaxQuant DDA intermediate | L10: Isobaric labeling | L12: Ion mobility CCS | L16: MaxQuant Atlas | T15: Interactions |
07:45 |
|
L05: Output tables | T04: Isobaric labeling | Q&A | T11: MaxQuant Atlas | Q&A |
08:30 |
|
Q&A | Q&A | Q&A | ||
23:45 | Opening | Announcements | Announcements | Announcements | Announcements |
|
Time/Day | Monday, July 21 | Tuesday, July 22 | Wednesday, July 23 | Thursday, July 24 | Friday, July 25 |
---|---|---|---|---|---|
00:45 | Opening | Announcements | Announcements | Announcements | Announcements |
01:00 | L01: Mass spectrometry-based proteomics | L06: DIA identification | T05: Dependent-peptide search | L13: PTMs theory | T12: Protein isoforms |
01:45 | L02: Andromeda search engine | L07: DIA quantification & multiplexing |
Kelly E. Stecker
Keynote speaker |
L14: PTMs | Participants presentations |
02:30 | Coffee break | Coffee break | Coffee break | Coffee break | Coffee break |
03:00 | L03: MaxQuant DDA workflow | L08: Machine learning and spectrum prediction | L11: Perseus introduction | T09: PTMs | L17: Cross linking |
03:45 | L04: Label-free quantification | T03: DIA | T06: Perseus basics I | L15: DIA PTMs | T13 Cross linking |
04:30 | Lunch break | Lunch break | Lunch break | Lunch break | Lunch break |
06:00 |
Alexander Makarov
Keynote speaker |
Albert J. R. Heck
Keynote speaker |
T07: Perseus basics II |
Noortje de Haan
Keynote speaker |
Ron Heeren
Keynote speaker |
06:45 | T01: MaxQuant DDA basics | L09: Metaproteomics | T08: Perseus intermediate | T10: Single cell proteomics | T14: Perseus time-series |
07:30 | Coffee break | Coffee break | Coffee break | Coffee break | Coffee break |
08:00 | T02: MaxQuant DDA intermediate | L10: Isobaric labeling | L12: Ion mobility CCS | L16: MaxQuant Atlas | T15: Interactions |
08:45 | L05: Output tables | T04: Isobaric labeling | Q&A | T11: MaxQuant Atlas | Q&A |
09:30 | Q&A | Q&A | Q&A |
Time/Day | Monday, July 21 | Tuesday, July 22 | Wednesday, July 23 | Thursday, July 24 | Friday, July 25 |
---|---|---|---|---|---|
01:45 | Opening | Announcements | Announcements | Announcements | Announcements |
02:00 | L01: Mass spectrometry-based proteomics | L06: DIA identification | T05: Dependent-peptide search | L13: PTMs theory | T12: Protein isoforms |
02:45 | L02: Andromeda search engine | L07: DIA quantification & multiplexing |
Kelly E. Stecker
Keynote speaker |
L14: PTMs | Participants presentations |
03:30 | Coffee break | Coffee break | Coffee break | Coffee break | Coffee break |
04:00 | L03: MaxQuant DDA workflow | L08: Machine learning and spectrum prediction | L11: Perseus introduction | T09: PTMs | L17: Cross linking |
04:45 | L04: Label-free quantification | T03: DIA | T06: Perseus basics I | L15: DIA PTMs | T13 Cross linking |
05:30 | Lunch break | Lunch break | Lunch break | Lunch break | Lunch break |
07:00 |
Alexander Makarov
Keynote speaker |
Albert J. R. Heck
Keynote speaker |
T07: Perseus basics II |
Noortje de Haan
Keynote speaker |
Ron Heeren
Keynote speaker |
07:45 | T01: MaxQuant DDA basics | L09: Metaproteomics | T08: Perseus intermediate | T10: Single cell proteomics | T14: Perseus time-series |
08:30 | Coffee break | Coffee break | Coffee break | Coffee break | Coffee break |
09:00 | T02: MaxQuant DDA intermediate | L10: Isobaric labeling | L12: Ion mobility CCS | L16: MaxQuant Atlas | T15: Interactions |
09:45 | L05: Output tables | T04: Isobaric labeling | Q&A | T11: MaxQuant Atlas | Q&A |
10:30 | Q&A | Q&A | Q&A |
Time/Day | Monday, July 21 | Tuesday, July 22 | Wednesday, July 23 | Thursday, July 24 | Friday, July 25 |
---|---|---|---|---|---|
02:45 | Opening | Announcements | Announcements | Announcements | Announcements |
03:00 | L01: Mass spectrometry-based proteomics | L06: DIA identification | T05: Dependent-peptide search | L13: PTMs theory | T12: Protein isoforms |
03:45 | L02: Andromeda search engine | L07: DIA quantification & multiplexing |
Kelly E. Stecker
Keynote speaker |
L14: PTMs | Participants presentations |
04:30 | Coffee break | Coffee break | Coffee break | Coffee break | Coffee break |
05:00 | L03: MaxQuant DDA workflow | L08: Machine learning and spectrum prediction | L11: Perseus introduction | T09: PTMs | L17: Cross linking |
05:45 | L04: Label-free quantification | T03: DIA | T06: Perseus basics I | L15: DIA PTMs | T13 Cross linking |
06:30 | Lunch break | Lunch break | Lunch break | Lunch break | Lunch break |
08:00 |
Alexander Makarov
Keynote speaker |
Albert J. R. Heck
Keynote speaker |
T07: Perseus basics II |
Noortje de Haan
Keynote speaker |
Ron Heeren
Keynote speaker |
08:45 | T01: MaxQuant DDA basics | L09: Metaproteomics | T08: Perseus intermediate | T10: Single cell proteomics | T14: Perseus time-series |
09:30 | Coffee break | Coffee break | Coffee break | Coffee break | Coffee break |
10:00 | T02: MaxQuant DDA intermediate | L10: Isobaric labeling | L12: Ion mobility CCS | L16: MaxQuant Atlas | T15: Interactions |
10:45 | L05: Output tables | T04: Isobaric labeling | Q&A | T11: MaxQuant Atlas | Q&A |
11:30 | Q&A | Q&A | Q&A |
Time/Day | Monday, July 21 | Tuesday, July 22 | Wednesday, July 23 | Thursday, July 24 | Friday, July 25 |
---|---|---|---|---|---|
03:45 | Opening | Announcements | Announcements | Announcements | Announcements |
04:00 | L01: Mass spectrometry-based proteomics | L06: DIA identification | T05: Dependent-peptide search | L13: PTMs theory | T12: Protein isoforms |
04:45 | L02: Andromeda search engine | L07: DIA quantification & multiplexing |
Kelly E. Stecker
Keynote speaker |
L14: PTMs | Participants presentations |
05:30 | Coffee break | Coffee break | Coffee break | Coffee break | Coffee break |
06:00 | L03: MaxQuant DDA workflow | L08: Machine learning and spectrum prediction | L11: Perseus introduction | T09: PTMs | L17: Cross linking |
06:45 | L04: Label-free quantification | T03: DIA | T06: Perseus basics I | L15: DIA PTMs | T13 Cross linking |
07:30 | Lunch break | Lunch break | Lunch break | Lunch break | Lunch break |
09:00 |
Alexander Makarov
Keynote speaker |
Albert J. R. Heck
Keynote speaker |
T07: Perseus basics II |
Noortje de Haan
Keynote speaker |
Ron Heeren
Keynote speaker |
09:45 | T01: MaxQuant DDA basics | L09: Metaproteomics | T08: Perseus intermediate | T10: Single cell proteomics | T14: Perseus time-series |
10:30 | Coffee break | Coffee break | Coffee break | Coffee break | Coffee break |
11:00 | T02: MaxQuant DDA intermediate | L10: Isobaric labeling | L12: Ion mobility CCS | L16: MaxQuant Atlas | T15: Interactions |
11:45 | L05: Output tables | T04: Isobaric labeling | Q&A | T11: MaxQuant Atlas | Q&A |
12:30 | Q&A | Q&A | Q&A |
Time/Day | Monday, July 21 | Tuesday, July 22 | Wednesday, July 23 | Thursday, July 24 | Friday, July 25 |
---|---|---|---|---|---|
04:45 | Opening | Announcements | Announcements | Announcements | Announcements |
05:00 | L01: Mass spectrometry-based proteomics | L06: DIA identification | T05: Dependent-peptide search | L13: PTMs theory | T12: Protein isoforms |
05:45 | L02: Andromeda search engine | L07: DIA quantification & multiplexing |
Kelly E. Stecker
Keynote speaker |
L14: PTMs | Participants presentations |
06:30 | Coffee break | Coffee break | Coffee break | Coffee break | Coffee break |
07:00 | L03: MaxQuant DDA workflow | L08: Machine learning and spectrum prediction | L11: Perseus introduction | T09: PTMs | L17: Cross linking |
07:45 | L04: Label-free quantification | T03: DIA | T06: Perseus basics I | L15: DIA PTMs | T13 Cross linking |
08:30 | Lunch break | Lunch break | Lunch break | Lunch break | Lunch break |
10:00 |
Alexander Makarov
Keynote speaker |
Albert J. R. Heck
Keynote speaker |
T07: Perseus basics II |
Noortje de Haan
Keynote speaker |
Ron Heeren
Keynote speaker |
10:45 | T01: MaxQuant DDA basics | L09: Metaproteomics | T08: Perseus intermediate | T10: Single cell proteomics | T14: Perseus time-series |
11:30 | Coffee break | Coffee break | Coffee break | Coffee break | Coffee break |
12:00 | T02: MaxQuant DDA intermediate | L10: Isobaric labeling | L12: Ion mobility CCS | L16: MaxQuant Atlas | T15: Interactions |
12:45 | L05: Output tables | T04: Isobaric labeling | Q&A | T11: MaxQuant Atlas | Q&A |
13:30 | Q&A | Q&A | Q&A |
Time/Day | Monday, July 21 | Tuesday, July 22 | Wednesday, July 23 | Thursday, July 24 | Friday, July 25 |
---|---|---|---|---|---|
05:45 | Opening | Announcements | Announcements | Announcements | Announcements |
06:00 | L01: Mass spectrometry-based proteomics | L06: DIA identification | T05: Dependent-peptide search | L13: PTMs theory | T12: Protein isoforms |
06:45 | L02: Andromeda search engine | L07: DIA quantification & multiplexing |
Kelly E. Stecker
Keynote speaker |
L14: PTMs | Participants presentations |
07:30 | Coffee break | Coffee break | Coffee break | Coffee break | Coffee break |
08:00 | L03: MaxQuant DDA workflow | L08: Machine learning and spectrum prediction | L11: Perseus introduction | T09: PTMs | L17: Cross linking |
08:45 | L04: Label-free quantification | T03: DIA | T06: Perseus basics I | L15: DIA PTMs | T13 Cross linking |
09:30 | Lunch break | Lunch break | Lunch break | Lunch break | Lunch break |
11:00 |
Alexander Makarov
Keynote speaker |
Albert J. R. Heck
Keynote speaker |
T07: Perseus basics II |
Noortje de Haan
Keynote speaker |
Ron Heeren
Keynote speaker |
11:45 | T01: MaxQuant DDA basics | L09: Metaproteomics | T08: Perseus intermediate | T10: Single cell proteomics | T14: Perseus time-series |
12:30 | Coffee break | Coffee break | Coffee break | Coffee break | Coffee break |
13:00 | T02: MaxQuant DDA intermediate | L10: Isobaric labeling | L12: Ion mobility CCS | L16: MaxQuant Atlas | T15: Interactions |
13:45 | L05: Output tables | T04: Isobaric labeling | Q&A | T11: MaxQuant Atlas | Q&A |
14:30 | Q&A | Q&A | Q&A |
Time/Day | Monday, July 21 | Tuesday, July 22 | Wednesday, July 23 | Thursday, July 24 | Friday, July 25 |
---|---|---|---|---|---|
06:45 | Opening | Announcements | Announcements | Announcements | Announcements |
07:00 | L01: Mass spectrometry-based proteomics | L06: DIA identification | T05: Dependent-peptide search | L13: PTMs theory | T12: Protein isoforms |
07:45 | L02: Andromeda search engine | L07: DIA quantification & multiplexing |
Kelly E. Stecker
Keynote speaker |
L14: PTMs | Participants presentations |
08:30 | Coffee break | Coffee break | Coffee break | Coffee break | Coffee break |
09:00 | L03: MaxQuant DDA workflow | L08: Machine learning and spectrum prediction | L11: Perseus introduction | T09: PTMs | L17: Cross linking |
09:45 | L04: Label-free quantification | T03: DIA | T06: Perseus basics I | L15: DIA PTMs | T13 Cross linking |
10:30 | Lunch break | Lunch break | Lunch break | Lunch break | Lunch break |
12:00 |
Alexander Makarov
Keynote speaker |
Albert J. R. Heck
Keynote speaker |
T07: Perseus basics II |
Noortje de Haan
Keynote speaker |
Ron Heeren
Keynote speaker |
12:45 | T01: MaxQuant DDA basics | L09: Metaproteomics | T08: Perseus intermediate | T10: Single cell proteomics | T14: Perseus time-series |
13:30 | Coffee break | Coffee break | Coffee break | Coffee break | Coffee break |
14:00 | T02: MaxQuant DDA intermediate | L10: Isobaric labeling | L12: Ion mobility CCS | L16: MaxQuant Atlas | T15: Interactions |
14:45 | L05: Output tables | T04: Isobaric labeling | Q&A | T11: MaxQuant Atlas | Q&A |
15:30 | Q&A | Q&A | Q&A |
Time/Day | Monday, July 21 | Tuesday, July 22 | Wednesday, July 23 | Thursday, July 24 | Friday, July 25 |
---|---|---|---|---|---|
07:45 | Opening | Announcements | Announcements | Announcements | Announcements |
08:00 | L01: Mass spectrometry-based proteomics | L06: DIA identification | T05: Dependent-peptide search | L13: PTMs theory | T12: Protein isoforms |
08:45 | L02: Andromeda search engine | L07: DIA quantification & multiplexing |
Kelly E. Stecker
Keynote speaker |
L14: PTMs | Participants presentations |
09:30 | Coffee break | Coffee break | Coffee break | Coffee break | Coffee break |
10:00 | L03: MaxQuant DDA workflow | L08: Machine learning and spectrum prediction | L11: Perseus introduction | T09: PTMs | L17: Cross linking |
10:45 | L04: Label-free quantification | T03: DIA | T06: Perseus basics I | L15: DIA PTMs | T13 Cross linking |
11:30 | Lunch break | Lunch break | Lunch break | Lunch break | Lunch break |
13:00 |
Alexander Makarov
Keynote speaker |
Albert J. R. Heck
Keynote speaker |
T07: Perseus basics II |
Noortje de Haan
Keynote speaker |
Ron Heeren
Keynote speaker |
13:45 | T01: MaxQuant DDA basics | L09: Metaproteomics | T08: Perseus intermediate | T10: Single cell proteomics | T14: Perseus time-series |
14:30 | Coffee break | Coffee break | Coffee break | Coffee break | Coffee break |
15:00 | T02: MaxQuant DDA intermediate | L10: Isobaric labeling | L12: Ion mobility CCS | L16: MaxQuant Atlas | T15: Interactions |
15:45 | L05: Output tables | T04: Isobaric labeling | Q&A | T11: MaxQuant Atlas | Q&A |
16:30 | Q&A | Q&A | Q&A |
Time/Day | Monday, July 21 | Tuesday, July 22 | Wednesday, July 23 | Thursday, July 24 | Friday, July 25 |
---|---|---|---|---|---|
08:45 | Opening | Announcements | Announcements | Announcements | Announcements |
09:00 | L01: Mass spectrometry-based proteomics | L06: DIA identification | T05: Dependent-peptide search | L13: PTMs theory | T12: Protein isoforms |
09:45 | L02: Andromeda search engine | L07: DIA quantification & multiplexing |
Kelly E. Stecker
Keynote speaker |
L14: PTMs | Participants presentations |
10:30 | Coffee break | Coffee break | Coffee break | Coffee break | Coffee break |
11:00 | L03: MaxQuant DDA workflow | L08: Machine learning and spectrum prediction | L11: Perseus introduction | T09: PTMs | L17: Cross linking |
11:45 | L04: Label-free quantification | T03: DIA | T06: Perseus basics I | L15: DIA PTMs | T13 Cross linking |
12:30 | Lunch break | Lunch break | Lunch break | Lunch break | Lunch break |
14:00 |
Alexander Makarov
Keynote speaker |
Albert J. R. Heck
Keynote speaker |
T07: Perseus basics II |
Noortje de Haan
Keynote speaker |
Ron Heeren
Keynote speaker |
14:45 | T01: MaxQuant DDA basics | L09: Metaproteomics | T08: Perseus intermediate | T10: Single cell proteomics | T14: Perseus time-series |
15:30 | Coffee break | Coffee break | Coffee break | Coffee break | Coffee break |
16:00 | T02: MaxQuant DDA intermediate | L10: Isobaric labeling | L12: Ion mobility CCS | L16: MaxQuant Atlas | T15: Interactions |
16:45 | L05: Output tables | T04: Isobaric labeling | Q&A | T11: MaxQuant Atlas | Q&A |
17:30 | Q&A | Q&A | Q&A |
Time/Day | Monday, July 21 | Tuesday, July 22 | Wednesday, July 23 | Thursday, July 24 | Friday, July 25 |
---|---|---|---|---|---|
09:45 | Opening | Announcements | Announcements | Announcements | Announcements |
10:00 | L01: Mass spectrometry-based proteomics | L06: DIA identification | T05: Dependent-peptide search | L13: PTMs theory | T12: Protein isoforms |
10:45 | L02: Andromeda search engine | L07: DIA quantification & multiplexing |
Kelly E. Stecker
Keynote speaker |
L14: PTMs | Participants presentations |
11:30 | Coffee break | Coffee break | Coffee break | Coffee break | Coffee break |
12:00 | L03: MaxQuant DDA workflow | L08: Machine learning and spectrum prediction | L11: Perseus introduction | T09: PTMs | L17: Cross linking |
12:45 | L04: Label-free quantification | T03: DIA | T06: Perseus basics I | L15: DIA PTMs | T13 Cross linking |
13:30 | Lunch break | Lunch break | Lunch break | Lunch break | Lunch break |
15:00 |
Alexander Makarov
Keynote speaker |
Albert J. R. Heck
Keynote speaker |
T07: Perseus basics II |
Noortje de Haan
Keynote speaker |
Ron Heeren
Keynote speaker |
15:45 | T01: MaxQuant DDA basics | L09: Metaproteomics | T08: Perseus intermediate | T10: Single cell proteomics | T14: Perseus time-series |
16:30 | Coffee break | Coffee break | Coffee break | Coffee break | Coffee break |
17:00 | T02: MaxQuant DDA intermediate | L10: Isobaric labeling | L12: Ion mobility CCS | L16: MaxQuant Atlas | T15: Interactions |
17:45 | L05: Output tables | T04: Isobaric labeling | Q&A | T11: MaxQuant Atlas | Q&A |
18:30 | Q&A | Q&A | Q&A |
Time/Day | Monday, July 21 | Tuesday, July 22 | Wednesday, July 23 | Thursday, July 24 | Friday, July 25 |
---|---|---|---|---|---|
10:45 | Opening | Announcements | Announcements | Announcements | Announcements |
11:00 | L01: Mass spectrometry-based proteomics | L06: DIA identification | T05: Dependent-peptide search | L13: PTMs theory | T12: Protein isoforms |
11:45 | L02: Andromeda search engine | L07: DIA quantification & multiplexing |
Kelly E. Stecker
Keynote speaker |
L14: PTMs | Participants presentations |
12:30 | Coffee break | Coffee break | Coffee break | Coffee break | Coffee break |
13:00 | L03: MaxQuant DDA workflow | L08: Machine learning and spectrum prediction | L11: Perseus introduction | T09: PTMs | L17: Cross linking |
13:45 | L04: Label-free quantification | T03: DIA | T06: Perseus basics I | L15: DIA PTMs | T13 Cross linking |
14:30 | Lunch break | Lunch break | Lunch break | Lunch break | Lunch break |
16:00 |
Alexander Makarov
Keynote speaker |
Albert J. R. Heck
Keynote speaker |
T07: Perseus basics II |
Noortje de Haan
Keynote speaker |
Ron Heeren
Keynote speaker |
16:45 | T01: MaxQuant DDA basics | L09: Metaproteomics | T08: Perseus intermediate | T10: Single cell proteomics | T14: Perseus time-series |
17:30 | Coffee break | Coffee break | Coffee break | Coffee break | Coffee break |
18:00 | T02: MaxQuant DDA intermediate | L10: Isobaric labeling | L12: Ion mobility CCS | L16: MaxQuant Atlas | T15: Interactions |
18:45 | L05: Output tables | T04: Isobaric labeling | Q&A | T11: MaxQuant Atlas | Q&A |
19:30 | Q&A | Q&A | Q&A |
Time/Day | Monday, July 21 | Tuesday, July 22 | Wednesday, July 23 | Thursday, July 24 | Friday, July 25 |
---|---|---|---|---|---|
11:45 | Opening | Announcements | Announcements | Announcements | Announcements |
12:00 | L01: Mass spectrometry-based proteomics | L06: DIA identification | T05: Dependent-peptide search | L13: PTMs theory | T12: Protein isoforms |
12:45 | L02: Andromeda search engine | L07: DIA quantification & multiplexing |
Kelly E. Stecker
Keynote speaker |
L14: PTMs | Participants presentations |
13:30 | Coffee break | Coffee break | Coffee break | Coffee break | Coffee break |
14:00 | L03: MaxQuant DDA workflow | L08: Machine learning and spectrum prediction | L11: Perseus introduction | T09: PTMs | L17: Cross linking |
14:45 | L04: Label-free quantification | T03: DIA | T06: Perseus basics I | L15: DIA PTMs | T13 Cross linking |
15:30 | Lunch break | Lunch break | Lunch break | Lunch break | Lunch break |
17:00 |
Alexander Makarov
Keynote speaker |
Albert J. R. Heck
Keynote speaker |
T07: Perseus basics II |
Noortje de Haan
Keynote speaker |
Ron Heeren
Keynote speaker |
17:45 | T01: MaxQuant DDA basics | L09: Metaproteomics | T08: Perseus intermediate | T10: Single cell proteomics | T14: Perseus time-series |
18:30 | Coffee break | Coffee break | Coffee break | Coffee break | Coffee break |
19:00 | T02: MaxQuant DDA intermediate | L10: Isobaric labeling | L12: Ion mobility CCS | L16: MaxQuant Atlas | T15: Interactions |
19:45 | L05: Output tables | T04: Isobaric labeling | Q&A | T11: MaxQuant Atlas | Q&A |
20:30 | Q&A | Q&A | Q&A |
Time/Day | Monday, July 21 | Tuesday, July 22 | Wednesday, July 23 | Thursday, July 24 | Friday, July 25 |
---|---|---|---|---|---|
12:45 | Opening | Announcements | Announcements | Announcements | Announcements |
13:00 | L01: Mass spectrometry-based proteomics | L06: DIA identification | T05: Dependent-peptide search | L13: PTMs theory | T12: Protein isoforms |
13:45 | L02: Andromeda search engine | L07: DIA quantification & multiplexing |
Kelly E. Stecker
Keynote speaker |
L14: PTMs | Participants presentations |
14:30 | Coffee break | Coffee break | Coffee break | Coffee break | Coffee break |
15:00 | L03: MaxQuant DDA workflow | L08: Machine learning and spectrum prediction | L11: Perseus introduction | T09: PTMs | L17: Cross linking |
15:45 | L04: Label-free quantification | T03: DIA | T06: Perseus basics I | L15: DIA PTMs | T13 Cross linking |
16:30 | Lunch break | Lunch break | Lunch break | Lunch break | Lunch break |
18:00 |
Alexander Makarov
Keynote speaker |
Albert J. R. Heck
Keynote speaker |
T07: Perseus basics II |
Noortje de Haan
Keynote speaker |
Ron Heeren
Keynote speaker |
18:45 | T01: MaxQuant DDA basics | L09: Metaproteomics | T08: Perseus intermediate | T10: Single cell proteomics | T14: Perseus time-series |
19:30 | Coffee break | Coffee break | Coffee break | Coffee break | Coffee break |
20:00 | T02: MaxQuant DDA intermediate | L10: Isobaric labeling | L12: Ion mobility CCS | L16: MaxQuant Atlas | T15: Interactions |
20:45 | L05: Output tables | T04: Isobaric labeling | Q&A | T11: MaxQuant Atlas | Q&A |
21:30 | Q&A | Q&A | Q&A |
Time/Day | Monday, July 21 | Tuesday, July 22 | Wednesday, July 23 | Thursday, July 24 | Friday, July 25 |
---|---|---|---|---|---|
13:45 | Opening | Announcements | Announcements | Announcements | Announcements |
14:00 | L01: Mass spectrometry-based proteomics | L06: DIA identification | T05: Dependent-peptide search | L13: PTMs theory | T12: Protein isoforms |
14:45 | L02: Andromeda search engine | L07: DIA quantification & multiplexing |
Kelly E. Stecker
Keynote speaker |
L14: PTMs | Participants presentations |
15:30 | Coffee break | Coffee break | Coffee break | Coffee break | Coffee break |
16:00 | L03: MaxQuant DDA workflow | L08: Machine learning and spectrum prediction | L11: Perseus introduction | T09: PTMs | L17: Cross linking |
16:45 | L04: Label-free quantification | T03: DIA | T06: Perseus basics I | L15: DIA PTMs | T13 Cross linking |
17:30 | Lunch break | Lunch break | Lunch break | Lunch break | Lunch break |
19:00 |
Alexander Makarov
Keynote speaker |
Albert J. R. Heck
Keynote speaker |
T07: Perseus basics II |
Noortje de Haan
Keynote speaker |
Ron Heeren
Keynote speaker |
19:45 | T01: MaxQuant DDA basics | L09: Metaproteomics | T08: Perseus intermediate | T10: Single cell proteomics | T14: Perseus time-series |
20:30 | Coffee break | Coffee break | Coffee break | Coffee break | Coffee break |
21:00 | T02: MaxQuant DDA intermediate | L10: Isobaric labeling | L12: Ion mobility CCS | L16: MaxQuant Atlas | T15: Interactions |
21:45 | L05: Output tables | T04: Isobaric labeling | Q&A | T11: MaxQuant Atlas | Q&A |
22:30 | Q&A | Q&A | Q&A |
Time/Day | Monday, July 21 | Tuesday, July 22 | Wednesday, July 23 | Thursday, July 24 | Friday, July 25 |
---|---|---|---|---|---|
14:45 | Opening | Announcements | Announcements | Announcements | Announcements |
15:00 | L01: Mass spectrometry-based proteomics | L06: DIA identification | T05: Dependent-peptide search | L13: PTMs theory | T12: Protein isoforms |
15:45 | L02: Andromeda search engine | L07: DIA quantification & multiplexing |
Kelly E. Stecker
Keynote speaker |
L14: PTMs | Participants presentations |
16:30 | Coffee break | Coffee break | Coffee break | Coffee break | Coffee break |
17:00 | L03: MaxQuant DDA workflow | L08: Machine learning and spectrum prediction | L11: Perseus introduction | T09: PTMs | L17: Cross linking |
17:45 | L04: Label-free quantification | T03: DIA | T06: Perseus basics I | L15: DIA PTMs | T13 Cross linking |
18:30 | Lunch break | Lunch break | Lunch break | Lunch break | Lunch break |
20:00 |
Alexander Makarov
Keynote speaker |
Albert J. R. Heck
Keynote speaker |
T07: Perseus basics II |
Noortje de Haan
Keynote speaker |
Ron Heeren
Keynote speaker |
20:45 | T01: MaxQuant DDA basics | L09: Metaproteomics | T08: Perseus intermediate | T10: Single cell proteomics | T14: Perseus time-series |
21:30 | Coffee break | Coffee break | Coffee break | Coffee break | Coffee break |
22:00 | T02: MaxQuant DDA intermediate | L10: Isobaric labeling | L12: Ion mobility CCS | L16: MaxQuant Atlas | T15: Interactions |
22:45 | L05: Output tables | T04: Isobaric labeling | Q&A | T11: MaxQuant Atlas | Q&A |
23:30 | Q&A | Q&A | Q&A |
Time/Day | Monday, July 21 | Tuesday, July 22 | Wednesday, July 23 | Thursday, July 24 | Friday, July 25 | Saturday, July 26 |
---|---|---|---|---|---|---|
00:30 |
|
Q&A | Q&A | Q&A | ||
15:45 | Opening | Announcements | Announcements | Announcements | Announcements |
|
16:00 | L01: Mass spectrometry-based proteomics | L06: DIA identification | T05: Dependent-peptide search | L13: PTMs theory | T12: Protein isoforms |
|
16:45 | L02: Andromeda search engine | L07: DIA quantification & multiplexing |
Kelly E. Stecker
Keynote speaker |
L14: PTMs | Participants presentations |
|
17:30 | Coffee break | Coffee break | Coffee break | Coffee break | Coffee break |
|
18:00 | L03: MaxQuant DDA workflow | L08: Machine learning and spectrum prediction | L11: Perseus introduction | T09: PTMs | L17: Cross linking |
|
18:45 | L04: Label-free quantification | T03: DIA | T06: Perseus basics I | L15: DIA PTMs | T13 Cross linking |
|
19:30 | Lunch break | Lunch break | Lunch break | Lunch break | Lunch break |
|
21:00 |
Alexander Makarov
Keynote speaker |
Albert J. R. Heck
Keynote speaker |
T07: Perseus basics II |
Noortje de Haan
Keynote speaker |
Ron Heeren
Keynote speaker |
|
21:45 | T01: MaxQuant DDA basics | L09: Metaproteomics | T08: Perseus intermediate | T10: Single cell proteomics | T14: Perseus time-series |
|
22:30 | Coffee break | Coffee break | Coffee break | Coffee break | Coffee break |
|
23:00 | T02: MaxQuant DDA intermediate | L10: Isobaric labeling | L12: Ion mobility CCS | L16: MaxQuant Atlas | T15: Interactions |
|
23:45 | L05: Output tables | T04: Isobaric labeling | Q&A | T11: MaxQuant Atlas | Q&A |
|
Time/Day | Monday, July 21 | Tuesday, July 22 | Wednesday, July 23 | Thursday, July 24 | Friday, July 25 | Saturday, July 26 |
---|---|---|---|---|---|---|
00:00 |
|
T02: MaxQuant DDA intermediate | L10: Isobaric labeling | L12: Ion mobility CCS | L16: MaxQuant Atlas | T15: Interactions |
00:45 |
|
L05: Output tables | T04: Isobaric labeling | Q&A | T11: MaxQuant Atlas | Q&A |
01:30 |
|
Q&A | Q&A | Q&A | ||
16:45 | Opening | Announcements | Announcements | Announcements | Announcements |
|
17:00 | L01: Mass spectrometry-based proteomics | L06: DIA identification | T05: Dependent-peptide search | L13: PTMs theory | T12: Protein isoforms |
|
17:45 | L02: Andromeda search engine | L07: DIA quantification & multiplexing |
Kelly E. Stecker
Keynote speaker |
L14: PTMs | Participants presentations |
|
18:30 | Coffee break | Coffee break | Coffee break | Coffee break | Coffee break |
|
19:00 | L03: MaxQuant DDA workflow | L08: Machine learning and spectrum prediction | L11: Perseus introduction | T09: PTMs | L17: Cross linking |
|
19:45 | L04: Label-free quantification | T03: DIA | T06: Perseus basics I | L15: DIA PTMs | T13 Cross linking |
|
20:30 | Lunch break | Lunch break | Lunch break | Lunch break | Lunch break |
|
22:00 |
Alexander Makarov
Keynote speaker |
Albert J. R. Heck
Keynote speaker |
T07: Perseus basics II |
Noortje de Haan
Keynote speaker |
Ron Heeren
Keynote speaker |
|
22:45 | T01: MaxQuant DDA basics | L09: Metaproteomics | T08: Perseus intermediate | T10: Single cell proteomics | T14: Perseus time-series |
|
23:30 | Coffee break | Coffee break | Coffee break | Coffee break | Coffee break |
|
Time/Day | Monday, July 21 | Tuesday, July 22 | Wednesday, July 23 | Thursday, July 24 | Friday, July 25 | Saturday, July 26 |
---|---|---|---|---|---|---|
00:30 |
|
Coffee break | Coffee break | Coffee break | Coffee break | Coffee break |
01:00 |
|
T02: MaxQuant DDA intermediate | L10: Isobaric labeling | L12: Ion mobility CCS | L16: MaxQuant Atlas | T15: Interactions |
01:45 |
|
L05: Output tables | T04: Isobaric labeling | Q&A | T11: MaxQuant Atlas | Q&A |
02:30 |
|
Q&A | Q&A | Q&A | ||
17:45 | Opening | Announcements | Announcements | Announcements | Announcements |
|
18:00 | L01: Mass spectrometry-based proteomics | L06: DIA identification | T05: Dependent-peptide search | L13: PTMs theory | T12: Protein isoforms |
|
18:45 | L02: Andromeda search engine | L07: DIA quantification & multiplexing |
Kelly E. Stecker
Keynote speaker |
L14: PTMs | Participants presentations |
|
19:30 | Coffee break | Coffee break | Coffee break | Coffee break | Coffee break |
|
20:00 | L03: MaxQuant DDA workflow | L08: Machine learning and spectrum prediction | L11: Perseus introduction | T09: PTMs | L17: Cross linking |
|
20:45 | L04: Label-free quantification | T03: DIA | T06: Perseus basics I | L15: DIA PTMs | T13 Cross linking |
|
21:30 | Lunch break | Lunch break | Lunch break | Lunch break | Lunch break |
|
23:00 |
Alexander Makarov
Keynote speaker |
Albert J. R. Heck
Keynote speaker |
T07: Perseus basics II |
Noortje de Haan
Keynote speaker |
Ron Heeren
Keynote speaker |
|
23:45 | T01: MaxQuant DDA basics | L09: Metaproteomics | T08: Perseus intermediate | T10: Single cell proteomics | T14: Perseus time-series |
|
Jürgen Cox
MPI of Biochemistry
Albert Heck
Utrecht University
Corine Heuzer
Utrecht University
Pavel Sinitcyn
Utrecht University
Pelagia Kyriakidou
MPI of Biochemistry
Jinqiu Xiao
MPI of Biochemistry
Carlo De Nart
MPI of Biochemistry
Juan Restrepo Lopez
MPI of Biochemistry
Dmitry Alexeev
MPI of Biochemistry
Shamil Urazbakhtin
MPI of Biochemistry
Walter Viegener
MPI of Biochemistry
Wenjie Bi
MPI of Biochemistry
For questions send an e-mail to the following address:
summerschool@maxquant.de
Physical address:
Max-Planck-Institute of Biochemistry - Computational Systems Biochemistry
Am Klopferspitz 18, D-82152 Martinsried, Germany